EnMCB

DOI: 10.18129/B9.bioc.EnMCB  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see EnMCB.

Predicting Disease Progression Based on Methylation Correlated Blocks using Ensemble Models

Bioconductor version: 3.17

Creation of the correlated blocks using DNA methylation profiles. Machine learning models can be constructed to predict differentially methylated blocks and disease progression.

Author: Xin Yu

Maintainer: Xin Yu <whirlsyu at gmail.com>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("EnMCB")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("EnMCB")

 

HTML	R Script	vignette
PDF		Reference Manual
Text		NEWS

Details

biocViews	DNAMethylation, MethylationArray, Normalization, Software, SupportVectorMachine
Version	1.12.0
In Bioconductor since	BioC 3.11 (R-4.0) (3.5 years)
License	GPL-2
Depends	R (>= 4.0)
Imports	survivalROC, glmnet, rms, mboost, Matrix, igraph, methods, survivalsvm, ggplot2, boot, e1071, survival, BiocFileCache
LinkingTo
Suggests	SummarizedExperiment, testthat, Biobase, survminer, affycoretools, knitr, plotROC, limma, rmarkdown
SystemRequirements
Enhances
URL
BugReports	https://github.com/whirlsyu/EnMCB/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	EnMCB_1.12.0.tar.gz
Windows Binary	EnMCB_1.12.0.zip (64-bit only)
macOS Binary (x86_64)	EnMCB_1.12.0.tgz
macOS Binary (arm64)	EnMCB_1.12.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/EnMCB
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/EnMCB
Bioc Package Browser	https://code.bioconductor.org/browse/EnMCB/
Package Short Url	https://bioconductor.org/packages/EnMCB/
Package Downloads Report	Download Stats