DOI: 10.18129/B9.bioc.VaSP  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see VaSP.

Quantification and Visualization of Variations of Splicing in Population

Bioconductor version: 3.17

Discovery of genome-wide variable alternative splicing events from short-read RNA-seq data and visualizations of gene splicing information for publication-quality multi-panel figures in a population. (Warning: The visualizing function is removed due to the dependent package Sushi deprecated. If you want to use it, please change back to an older version.)

Author: Huihui Yu [aut, cre] , Qian Du [aut] , Chi Zhang [aut]

Maintainer: Huihui Yu <yuhuihui2011 at>

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biocViews AlternativeSplicing, Clustering, DifferentialExpression, DifferentialSplicing, ImmunoOncology, KEGG, Preprocessing, RNASeq, Software, StatisticalMethod, Visualization
Version 1.12.0
In Bioconductor since BioC 3.12 (R-4.0) (3 years)
License GPL (>= 2.0)
Depends R (>= 4.0), ballgown
Imports IRanges, GenomicRanges, S4Vectors, parallel, matrixStats, GenomicAlignments, GenomeInfoDb, Rsamtools, cluster, stats, graphics, methods
Suggests knitr, rmarkdown
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