TarSeqQC

DOI: 10.18129/B9.bioc.TarSeqQC  

This package is for version 3.17 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see TarSeqQC.

TARgeted SEQuencing Experiment Quality Control

Bioconductor version: 3.17

The package allows the representation of targeted experiment in R. This is based on current packages and incorporates functions to do a quality control over this kind of experiments and a fast exploration of the sequenced regions. An xlsx file is generated as output.

Author: Gabriela A. Merino, Cristobal Fresno, Yanina Murua, Andrea S. Llera and Elmer A. Fernandez

Maintainer: Gabriela Merino <merino.gabriela33 at gmail.com>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("TarSeqQC")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	Alignment, Coverage, DataImport, QualityControl, Sequencing, Software, TargetedResequencing, Visualization
Version	1.29.0
In Bioconductor since	BioC 3.2 (R-3.2) (8 years)
License	GPL (>=2)
Depends	R (>= 3.5.1), methods, GenomicRanges, Rsamtools(>= 1.9.2), ggplot2, plyr, openxlsx
Imports	grDevices, stats, utils, S4Vectors, IRanges, BiocGenerics, reshape2, GenomeInfoDb, BiocParallel, Biostrings, cowplot, graphics, GenomicAlignments, Hmisc
LinkingTo
Suggests	BiocManager, RUnit
SystemRequirements
Enhances
URL	http://www.bdmg.com.ar
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)	TarSeqQC_1.29.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/TarSeqQC
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/TarSeqQC
Bioc Package Browser	https://code.bioconductor.org/browse/TarSeqQC/
Package Short Url	https://bioconductor.org/packages/TarSeqQC/
Package Downloads Report	Download Stats