DOI: 10.18129/B9.bioc.TNBC.CMS  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see TNBC.CMS.

TNBC.CMS: Prediction of TNBC Consensus Molecular Subtypes

Bioconductor version: 3.17

This package implements a machine learning-based classifier for the assignment of consensus molecular subtypes to TNBC samples. It also provides functions to summarize genomic and clinical characteristics.

Author: Doyeong Yu, Jihyun Kim, In Hae Park, Charny Park

Maintainer: Doyeong Yu < at>

Citation (from within R, enter citation("TNBC.CMS")):


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biocViews Classification, Clustering, GeneExpression, GenePrediction, Software, SupportVectorMachine
Version 1.16.0
In Bioconductor since BioC 3.9 (R-3.6) (4.5 years)
License GPL-3
Depends R (>= 3.6.0), e1071, quadprog, SummarizedExperiment
Imports GSVA(>= 1.26.0), pheatmap, grDevices, RColorBrewer, pracma, GGally, R.utils, forestplot, ggplot2, ggpubr, survival, grid, stats, methods
Suggests knitr
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