TDbasedUFEadv

DOI: 10.18129/B9.bioc.TDbasedUFEadv  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see TDbasedUFEadv.

Advanced package of tensor decomposition based unsupervised feature extraction

Bioconductor version: 3.17

This is an advanced version of TDbasedUFE, which is a comprehensive package to perform Tensor decomposition based unsupervised feature extraction. In contrast to TDbasedUFE which can perform simple the feature selection and the multiomics analyses, this package can perform more complicated and advanced features, but they are not so popularly required. Only users who require more specific features can make use of its functionality.

Author: Y-h. Taguchi [aut, cre]

Maintainer: Y-h. Taguchi <tag at granular.com>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("TDbasedUFEadv")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TDbasedUFEadv")

 

HTML	R Script	Enrichment
HTML	R Script	Explanation of TDbasedUFEadv
HTML	R Script	How to use TDbasedUFEadv
PDF		Reference Manual
Text		NEWS

Details

biocViews	FeatureExtraction, GeneExpression, MethylationArray, SingleCell, Software
Version	1.0.0
In Bioconductor since	BioC 3.17 (R-4.3) (< 6 months)
License	GPL-3
Depends
Imports	TDbasedUFE, Biobase, GenomicRanges, utils, rTensor, methods, graphics, RTCGA, stats, enrichplot, DOSE, STRINGdb, enrichR, hash, shiny
LinkingTo
Suggests	knitr, rmarkdown, testthat (>= 3.0.0), RTCGA.rnaseq, RTCGA.clinical, BiocStyle, MOFAdata
SystemRequirements
Enhances
URL	https://github.com/tagtag/TDbasedUFEadv
BugReports	https://github.com/tagtag/TDbasedUFEadv/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	TDbasedUFEadv_1.0.0.tar.gz
Windows Binary	TDbasedUFEadv_1.0.0.zip
macOS Binary (x86_64)	TDbasedUFEadv_1.0.0.tgz
macOS Binary (arm64)	TDbasedUFEadv_1.0.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/TDbasedUFEadv
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/TDbasedUFEadv
Bioc Package Browser	https://code.bioconductor.org/browse/TDbasedUFEadv/
Package Short Url	https://bioconductor.org/packages/TDbasedUFEadv/
Package Downloads Report	Download Stats