TDbasedUFE

DOI: 10.18129/B9.bioc.TDbasedUFE  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see TDbasedUFE.

Tensor Decomposition Based Unsupervised Feature Extraction

Bioconductor version: 3.17

This is a comprehensive package to perform Tensor decomposition based unsupervised feature extraction. It can perform unsupervised feature extraction. It uses tensor decomposition. It is applicable to gene expression, DNA methylation, and histone modification etc. It can perform multiomics analysis. It is also potentially applicable to single cell omics data sets.

Author: Y-h. Taguchi [aut, cre]

Maintainer: Y-h. Taguchi <tag at granular.com>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("TDbasedUFE")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TDbasedUFE")

 

HTML	R Script	QuickStart
HTML	R Script	TDbasedUFE
PDF		Reference Manual
Text		NEWS

Details

biocViews	FeatureExtraction, GeneExpression, MethylationArray, SingleCell, Software
Version	1.0.0
In Bioconductor since	BioC 3.17 (R-4.3) (< 6 months)
License	GPL-3
Depends
Imports	GenomicRanges, rTensor, readr, methods, MOFAdata, tximport, tximportData, graphics, stats, utils, shiny
LinkingTo
Suggests	BiocStyle, knitr, rmarkdown, testthat (>= 3.0.0)
SystemRequirements
Enhances
URL	https://github.com/tagtag/TDbasedUFE
BugReports	https://github.com/tagtag/TDbasedUFE/issues
Depends On Me
Imports Me	TDbasedUFEadv
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	TDbasedUFE_1.0.0.tar.gz
Windows Binary	TDbasedUFE_1.0.0.zip
macOS Binary (x86_64)	TDbasedUFE_1.0.0.tgz
macOS Binary (arm64)	TDbasedUFE_1.0.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/TDbasedUFE
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/TDbasedUFE
Bioc Package Browser	https://code.bioconductor.org/browse/TDbasedUFE/
Package Short Url	https://bioconductor.org/packages/TDbasedUFE/
Package Downloads Report	Download Stats