DOI: 10.18129/B9.bioc.SynExtend  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see SynExtend.

Tools for Working With Synteny Objects

Bioconductor version: 3.17

Shared order between genomic sequences provide a great deal of information. Synteny objects produced by the R package DECIPHER provides quantitative information about that shared order. SynExtend provides tools for extracting information from Synteny objects.

Author: Nicholas Cooley [aut, cre] , Aidan Lakshman [aut, ctb] , Adelle Fernando [ctb], Erik Wright [aut]

Maintainer: Nicholas Cooley <npc19 at>

Citation (from within R, enter citation("SynExtend")):


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PDF R Script UsingSynExtend
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biocViews Clustering, ComparativeGenomics, DataImport, Genetics, Software
Version 1.12.0
In Bioconductor since BioC 3.11 (R-4.0) (3.5 years)
License GPL-3
Depends R (>= 4.2.0), DECIPHER(>= 2.24.0)
Imports methods, Biostrings, S4Vectors, IRanges, utils, stats, parallel, graphics, grDevices
Suggests BiocStyle, knitr, igraph, markdown, rmarkdown
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