This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see DECIPHER.
Bioconductor version: 3.17
A toolset for deciphering and managing biological sequences.
Author: Erik Wright
Maintainer: Erik Wright <eswright at pitt.edu>
Citation (from within R,
enter citation("DECIPHER")
):
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("DECIPHER")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("DECIPHER")
R Script | Classify Sequences | |
R Script | Design Group-Specific FISH Probes | |
R Script | Design Group-Specific Primers | |
R Script | Design Microarray Probes | |
R Script | Design Primers That Yield Group-Specific Signatures | |
R Script | Detecting Obscure Tandem Repeats in Sequences | |
R Script | Finding Chimeric Sequences | |
R Script | Getting Started DECIPHERing | |
R Script | Growing Phylogenetic Trees with TreeLine | |
R Script | The Art of Multiple Sequence Alignment in R | |
R Script | The Double Life of RNA: Uncovering Non-Coding RNAs | |
R Script | The Magic of Gene Finding | |
R Script | Upsize Your Clustering with Clusterize | |
Reference Manual |
biocViews | Alignment, Clustering, DataImport, GenePrediction, Genetics, ImmunoOncology, Microarray, Microbiome, QualityControl, Sequencing, Software, Visualization, WholeGenome, qPCR |
Version | 2.28.0 |
In Bioconductor since | BioC 2.9 (R-2.14) (12 years) |
License | GPL-3 |
Depends | R (>= 3.5.0), Biostrings(>= 2.59.1), RSQLite (>= 1.1), stats, parallel |
Imports | methods, DBI, S4Vectors, IRanges, XVector |
LinkingTo | Biostrings, S4Vectors, IRanges, XVector |
Suggests | |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | AssessORF, sangeranalyseR, SynExtend |
Imports Me | AssessORFData, mia, openPrimeR, scifer |
Suggests Me | MicrobiotaProcess |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | DECIPHER_2.28.0.tar.gz |
Windows Binary | DECIPHER_2.28.0.zip |
macOS Binary (x86_64) | DECIPHER_2.28.0.tgz |
macOS Binary (arm64) | DECIPHER_2.28.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/DECIPHER |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/DECIPHER |
Bioc Package Browser | https://code.bioconductor.org/browse/DECIPHER/ |
Package Short Url | https://bioconductor.org/packages/DECIPHER/ |
Package Downloads Report | Download Stats |
Documentation »
Bioconductor
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations: