Rqc

DOI: 10.18129/B9.bioc.Rqc  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see Rqc.

Quality Control Tool for High-Throughput Sequencing Data

Bioconductor version: 3.17

Rqc is an optimised tool designed for quality control and assessment of high-throughput sequencing data. It performs parallel processing of entire files and produces a report which contains a set of high-resolution graphics.

Author: Welliton Souza, Benilton Carvalho <beniltoncarvalho at gmail.com>

Maintainer: Welliton Souza <well309 at gmail.com>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Rqc")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Rqc")

 

HTML	R Script	Using Rqc
PDF		Reference Manual
Text		NEWS

Details

biocViews	DataImport, QualityControl, Sequencing, Software
Version	1.34.0
In Bioconductor since	BioC 3.0 (R-3.1) (9 years)
License	GPL (>= 2)
Depends	BiocParallel, ShortRead, ggplot2
Imports	BiocGenerics(>= 0.25.1), Biostrings, IRanges, methods, S4Vectors, knitr (>= 1.7), BiocStyle, plyr, markdown, grid, reshape2, Rcpp (>= 0.11.6), biovizBase, shiny, Rsamtools, GenomicAlignments, GenomicFiles
LinkingTo	Rcpp
Suggests	rmarkdown, testthat
SystemRequirements
Enhances
URL	https://github.com/labbcb/Rqc
BugReports	https://github.com/labbcb/Rqc/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	Rqc_1.34.0.tar.gz
Windows Binary	Rqc_1.34.0.zip
macOS Binary (x86_64)	Rqc_1.34.0.tgz
macOS Binary (arm64)	Rqc_1.34.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/Rqc
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/Rqc
Bioc Package Browser	https://code.bioconductor.org/browse/Rqc/
Package Short Url	https://bioconductor.org/packages/Rqc/
Package Downloads Report	Download Stats