DOI: 10.18129/B9.bioc.MetaVolcanoR  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see MetaVolcanoR.

Gene Expression Meta-analysis Visualization Tool

Bioconductor version: 3.17

MetaVolcanoR combines differential gene expression results. It implements three strategies to summarize differential gene expression from different studies. i) Random Effects Model (REM) approach, ii) a p-value combining-approach, and iii) a vote-counting approach. In all cases, MetaVolcano exploits the Volcano plot reasoning to visualize the gene expression meta-analysis results.

Author: Cesar Prada [aut, cre], Diogenes Lima [aut], Helder Nakaya [aut, ths]

Maintainer: Cesar Prada <cesar.prada.medina at>

Citation (from within R, enter citation("MetaVolcanoR")):


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HTML R Script MetaVolcanoR inputs: differential expression examples
HTML R Script MetaVolcanoR: Differential expression meta-analysis tool
PDF   Reference Manual
Text   NEWS


biocViews DifferentialExpression, GeneExpression, RNASeq, Software, Transcriptomics, mRNAMicroarray
Version 1.14.0
In Bioconductor since BioC 3.10 (R-3.6) (4 years)
License GPL-3
Depends R (>= 4.1.1)
Imports methods, data.table, dplyr, tidyr, plotly, ggplot2, cowplot, parallel, metafor, metap, rlang, topconfects, grDevices, graphics, stats, htmlwidgets
Suggests knitr, markdown, rmarkdown, testthat
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