Gene Expression Meta-analysis Visualization Tool

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Documentation for package ‘MetaVolcanoR’ version 1.14.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

calc_vi	A function to calculate variance from confidence interval limits
collapse_deg	A function to filter out geneIDs standing for the same gene name
combining_mv	A function to draw the 'Combining meta-analysis' MetaVolcano
cum_freq_data	A data formating function for inverse-cummulative DEG distribution
deg_def	A DEG definition function
diffexplist	Differential expression results from five studies
draw_cum_freq	A function to visualize the inverse-cummulative DEG distribution
draw_degbar	A function for DEG barplot visualization
draw_forest	A function to draw a forest plot from the REM MetaVolcano result
MetaVolcano-class	An S4 class to represent MetaVolcanoR results
plot_mv	A MetaVolcano ploting function
plot_rem	A function to plot the Random Effect Model (REM) MetaVolcano
remodel	A function to model foldchange variance along several studies This function calculate the REM-summary fold-change
rem_mv	A function to perform the Random Effect Model (REM) MetaVolcano
rename_col	A column renaming function merged inputs
set_degbar_data	A function setting data format for DEG barplot visualization
votecount_mv	A function to draw the 'Vote-counting meta-analysis' MetaVolcano