DOI: 10.18129/B9.bioc.MAST  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see MAST.

Model-based Analysis of Single Cell Transcriptomics

Bioconductor version: 3.17

Methods and models for handling zero-inflated single cell assay data.

Author: Andrew McDavid [aut, cre], Greg Finak [aut], Masanao Yajima [aut]

Maintainer: Andrew McDavid <Andrew_McDavid at>

Citation (from within R, enter citation("MAST")):


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HTML R Script An Introduction to MAST
HTML R Script Interoptability between MAST and SingleCellExperiment-derived packages
HTML R Script Using MAST for filtering, differential expression and gene set enrichment in MAIT cells
PDF   Reference Manual
Text   NEWS


biocViews DifferentialExpression, GeneExpression, GeneSetEnrichment, RNASeq, SingleCell, Software, Transcriptomics
Version 1.26.0
In Bioconductor since BioC 3.4 (R-3.3) (7 years)
License GPL(>= 2)
Depends SingleCellExperiment(>= 1.2.0), R (>= 3.5)
Imports Biobase, BiocGenerics, S4Vectors, data.table, ggplot2, plyr, stringr, abind, methods, parallel, reshape2, stats, stats4, graphics, utils, SummarizedExperiment(>= 1.5.3), progress, Matrix
Suggests knitr, rmarkdown, testthat, lme4 (>= 1.0), blme, roxygen2 (> 6.0.0), numDeriv, car, gdata, lattice, GGally, GSEABase, NMF, TxDb.Hsapiens.UCSC.hg19.knownGene, rsvd, limma, RColorBrewer, BiocStyle, scater, DelayedArray, HDF5Array, zinbwave, dplyr
Depends On Me POWSC
Imports Me benchdamic, celaref, singleCellTK
Suggests Me clusterExperiment, EWCE
Links To Me
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Source Package MAST_1.26.0.tar.gz
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