DOI: 10.18129/B9.bioc.ImmuneSpaceR  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see ImmuneSpaceR.

A Thin Wrapper around the ImmuneSpace Data and Tools Portal

Bioconductor version: 3.17

Provides a convenient API for accessing data sets within ImmuneSpace Data and Tools Portal (, the data repository and analysis platform of the Human Immunology Project Consortium (HIPC).

Author: Greg Finak [aut], Renan Sauteraud [aut], Mike Jiang [aut], Gil Guday [aut], Leo Dashevskiy [aut], Evan Henrich [aut], Ju Yeong Kim [aut], Lauren Wolfe [aut], Helen Miller [aut], Raphael Gottardo [aut], ImmuneSpace Package Maintainer [cre, cph]

Maintainer: ImmuneSpace Package Maintainer <immunespace at>

Citation (from within R, enter citation("ImmuneSpaceR")):


To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


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HTML R Script An Introduction to the ImmuneSpaceR Package
HTML R Script Downloading Datasets with getDataset
HTML R Script Handling Expression Matrices with ImmuneSpaceR
HTML R Script interactive_netrc() Function Walkthrough
HTML R Script SDY144: Correlation of HAI/Virus Neutralizition Titer and Cell Counts
HTML R Script SDY180: Abundance of Plasmablasts Measured by Multiparameter Flow Cytometry
HTML R Script SDY269: Correlating HAI with Flow Cytometry and ELISPOT Results
PDF   Reference Manual
Text   NEWS


biocViews DataImport, DataRepresentation, Software, ThirdPartyClient
Version 1.28.0
In Bioconductor since BioC 3.3 (R-3.3) (7.5 years)
License GPL-2
Depends R (>= 3.5.0)
Imports utils, R6, data.table, curl, httr, Rlabkey (>= 2.3.1), Biobase, pheatmap, ggplot2 (>= 3.2.0), scales, stats, gplots, plotly, heatmaply (>= 0.7.0), jsonlite, rmarkdown, preprocessCore, flowCore, flowWorkspace, digest
Suggests knitr, testthat, covr, withr
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