DOI: 10.18129/B9.bioc.CTdata  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see CTdata.

Data companion to CTexploreR

Bioconductor version: 3.17

Data from publicly available databases (GTEx, CCLE, TCGA and ENCODE) that go with CTexploreR in order to re-define a comprehensive and thoroughly curated list of CT genes and their main characteristics.

Author: Axelle Loriot [aut] , Julie Devis [aut] , Anna Diacofotaki [ctb], Charles De Smet [ths], Laurent Gatto [aut, ths, cre]

Maintainer: Laurent Gatto <laurent.gatto at uclouvain.be>

Citation (from within R, enter citation("CTdata")):


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biocViews DataImport, Epigenetics, ExperimentHubSoftware, GeneExpression, Software, Transcriptomics
Version 1.0.2
In Bioconductor since BioC 3.17 (R-4.3) (< 6 months)
License Artistic-2.0
Depends R (>= 4.2)
Imports ExperimentHub, utils
Suggests testthat (>= 3.0.0), DT, BiocStyle, knitr, rmarkdown, SummarizedExperiment
BugReports https://github.com/UCLouvain-CBIO/CTdata/issues
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Follow Installation instructions to use this package in your R session.

Source Package CTdata_1.0.2.tar.gz
Windows Binary CTdata_1.0.2.zip
macOS Binary (x86_64) CTdata_1.0.2.tgz
macOS Binary (arm64) CTdata_1.0.2.tgz
Source Repository git clone https://git.bioconductor.org/packages/CTdata
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/CTdata
Bioc Package Browser https://code.bioconductor.org/browse/CTdata/
Package Short Url https://bioconductor.org/packages/CTdata/
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