Data companion to CTexploreR
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Documentation for package ‘CTdata’ version 1.0.2
Help Pages
| CCLE_correlation_matrix | Gene correlations in CCLE cancer cell lines |
| CCLE_data | Genes expression data in CCLE |
| CTdata | All CTdata datasets |
| CT_genes | CT genes description table |
| CT_mean_methylation_in_tissues | CT genes' promoters mean methylation |
| CT_methylation_in_tissues | Methylation of CpGs within CT promoters |
| DAC_treated_cells | DE genes with/without demethylating agent |
| DAC_treated_cells_multimapping | DE genes treated or not with a demethylating agent |
| GTEX_data | Genes expression in GTEX |
| makeTags | A short function that returns the default CTdata tags and, if provided, additional data-specific tags. |
| normal_tissues_multimapping_data | Gene expression values in normal tissues |
| TCGA_CT_methylation | Methylation of CT promoters in TCGA samples |
| TCGA_TPM | Gene expression in TCGA samples |