ASpediaFI

DOI: 10.18129/B9.bioc.ASpediaFI  

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.17 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see ASpediaFI.

ASpedia-FI: Functional Interaction Analysis of Alternative Splicing Events

Bioconductor version: 3.17

This package provides functionalities for a systematic and integrative analysis of alternative splicing events and their functional interactions.

Author: Doyeong Yu, Kyubin Lee, Daejin Hyung, Soo Young Cho, Charny Park

Maintainer: Doyeong Yu <parklab.bi at gmail.com>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ASpediaFI")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	AlternativeSplicing, Annotation, Coverage, GeneExpression, GeneSetEnrichment, GraphAndNetwork, KEGG, Network, NetworkInference, Pathways, Reactome, Sequencing, Software, Transcription, Visualization
Version	1.14.0
In Bioconductor since	BioC 3.10 (R-3.6) (4 years)
License	GPL-3
Depends	R (>= 3.6.0), SummarizedExperiment, ROCR
Imports	BiocParallel, GenomicAlignments, GenomicFeatures, GenomicRanges, IRanges, IVAS, Rsamtools, biomaRt, limma, S4Vectors, stats, DRaWR, GenomeInfoDb, Gviz, Matrix, dplyr, fgsea, reshape2, igraph, graphics, e1071, methods, rtracklayer, scales, grid, ggplot2, mGSZ, utils
LinkingTo
Suggests	knitr
SystemRequirements
Enhances
URL
BugReports	https://github.com/nachoryu/ASpediaFI
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/ASpediaFI
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/ASpediaFI
Package Short Url	https://bioconductor.org/packages/ASpediaFI/
Package Downloads Report	Download Stats