DOI: 10.18129/B9.bioc.APAlyzer  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see APAlyzer.

A toolkit for APA analysis using RNA-seq data

Bioconductor version: 3.17

Perform 3'UTR APA, Intronic APA and gene expression analysis using RNA-seq data.

Author: Ruijia Wang [cre, aut] , Bin Tian [aut], Wei-Chun Chen [aut]

Maintainer: Ruijia Wang <rjwang.bioinfo at gmail.com>

Citation (from within R, enter citation("APAlyzer")):


To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))


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HTML R Script APAlyzer: toolkit for RNA-seq APA analysis
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biocViews Annotation, DataImport, DifferentialExpression, GeneExpression, GeneRegulation, RNASeq, Sequencing, Software
Version 1.14.0
In Bioconductor since BioC 3.10 (R-3.6) (4 years)
License LGPL-3
Depends R (>= 3.5.0)
Imports GenomicRanges, GenomicFeatures, GenomicAlignments, DESeq2, ggrepel, SummarizedExperiment, Rsubread, stats, ggplot2, methods, rtracklayer, VariantAnnotation, dplyr, tidyr, repmis, Rsamtools, HybridMTest
Suggests knitr, rmarkdown, BiocStyle, org.Mm.eg.db, AnnotationDbi, TBX20BamSubset, testthat, pasillaBamSubset
URL https://github.com/RJWANGbioinfo/APAlyzer/
BugReports https://github.com/RJWANGbioinfo/APAlyzer/issues
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Source Package APAlyzer_1.14.0.tar.gz
Windows Binary APAlyzer_1.14.0.zip
macOS Binary (x86_64) APAlyzer_1.14.0.tgz
macOS Binary (arm64) APAlyzer_1.14.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/APAlyzer
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/APAlyzer
Bioc Package Browser https://code.bioconductor.org/browse/APAlyzer/
Package Short Url https://bioconductor.org/packages/APAlyzer/
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