1 Detailed explanation: Get GDC data menu

For a detailed manual for this section please access this link:

  1. Data menu manual

7 Detailed explanation: Manage SummarizedExperiment menu

For a detailed manual for this section please access this link: Manage SummarizedExperiment

References

Aryee, Martin J, Andrew E Jaffe, Hector Corrada-Bravo, Christine Ladd-Acosta, Andrew P Feinberg, Kasper D Hansen, and Rafael A Irizarry. 2014. “Minfi: A Flexible and Comprehensive Bioconductor Package for the Analysis of Infinium Dna Methylation Microarrays.” Bioinformatics 30 (10): 1363–9.

Huber, Wolfgang, Vincent J Carey, Robert Gentleman, Simon Anders, Marc Carlson, Benilton S Carvalho, Hector Corrada Bravo, et al. 2015. “Orchestrating High-Throughput Genomic Analysis with Bioconductor.” Nature Methods 12 (2): 115–21.

Morris, Tiffany J, and Stephan Beck. 2015. “Analysis Pipelines and Packages for Infinium Humanmethylation450 Beadchip (450k) Data.” Methods 72: 3–8.

Zhou, Wanding, Peter W Laird, and Hui Shen. 2016. “Comprehensive Characterization, Annotation and Innovative Use of Infinium Dna Methylation Beadchip Probes.” Nucleic Acids Research, gkw967.