rWikiPathways

DOI: 10.18129/B9.bioc.rWikiPathways  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see rWikiPathways.

rWikiPathways - R client library for the WikiPathways API

Bioconductor version: 3.16

Use this package to interface with the WikiPathways API. It provides programmatic access to WikiPathways content in multiple data and image formats, including official monthly release files and convenient GMT read/write functions.

Author: Egon Willighagen [aut, cre] , Alex Pico [aut]

Maintainer: Egon Willighagen <egon.willighagen at gmail.com>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("rWikiPathways")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rWikiPathways")

 

HTML	R Script	1. Overview
HTML	R Script	2. rWikiPathways and BridgeDbR
HTML	R Script	3. rWikiPathways and RCy3
HTML	R Script	4. Pathway Analysis
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	GraphAndNetwork, Metabolomics, Network, Software, ThirdPartyClient, Visualization
Version	1.18.2
In Bioconductor since	BioC 3.7 (R-3.5) (5 years)
License	MIT + file LICENSE
Depends
Imports	httr, utils, XML, rjson, data.table, tidyr, RCurl
LinkingTo
Suggests	testthat, BiocStyle, knitr, rmarkdown, BridgeDbR
SystemRequirements
Enhances
URL	https://github.com/wikipathways/rwikipathways
BugReports	https://github.com/wikipathways/rwikipathways/issues
Depends On Me
Imports Me	famat, multiSight, NoRCE, TimiRGeN
Suggests Me	TRONCO
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	rWikiPathways_1.18.2.tar.gz
Windows Binary	rWikiPathways_1.18.2.zip
macOS Binary (x86_64)	rWikiPathways_1.18.2.tgz
macOS Binary (arm64)	rWikiPathways_1.18.2.tgz
Source Repository	git clone https://git.bioconductor.org/packages/rWikiPathways
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/rWikiPathways
Bioc Package Browser	https://code.bioconductor.org/browse/rWikiPathways/
Package Short Url	https://bioconductor.org/packages/rWikiPathways/
Package Downloads Report	Download Stats