DOI: 10.18129/B9.bioc.multiSight  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see multiSight.

Multi-omics Classification, Functional Enrichment and Network Inference analysis

Bioconductor version: 3.16

multiSight is an R package providing functions to analyze your omic datasets in a multi-omics manner based on Stouffer's p-value pooling and multi-block statistical methods. For each omic dataset you furnish, multiSight provides classification models with feature selection you can use as biosignature: (i) To forecast phenotypes (e.g. to diagnostic tasks, histological subtyping), (ii) To design Pathways and gene ontology enrichments (Over Representation Analysis), (iii) To build Network inference linked to PubMed querying to make assumptions easier and data-driven. Main analysis are embedded in an user-friendly graphical interface.

Author: Florian Jeanneret [cre, aut] , Stephane Gazut [aut]

Maintainer: Florian Jeanneret <florian.jeanneret at>

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biocViews Classification, DifferentialExpression, GeneSetEnrichment, Network, NetworkInference, Pathways, RNASeq, Software, miRNA
Version 1.6.0
In Bioconductor since BioC 3.13 (R-4.1) (2 years)
License CeCILL + file LICENSE
Depends R (>= 4.1)
Imports golem, config, R6, shiny, shinydashboard, DT, dplyr, stringr, anyLib, caret, biosigner, mixOmics, stats, DESeq2, clusterProfiler, rWikiPathways, ReactomePA, enrichplot, ppcor, metap, infotheo, igraph, networkD3, easyPubMed, utils, htmltools, rmarkdown, ggnewscale
Suggests, rlang, markdown, attempt, processx, testthat, knitr, BiocStyle
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