makecdfenv

DOI: 10.18129/B9.bioc.makecdfenv  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see makecdfenv.

CDF Environment Maker

Bioconductor version: 3.16

This package has two functions. One reads a Affymetrix chip description file (CDF) and creates a hash table environment containing the location/probe set membership mapping. The other creates a package that automatically loads that environment.

Author: Rafael A. Irizarry <rafa at jhu.edu>, Laurent Gautier <laurent at cbs.dtu.dk>, Wolfgang Huber <w.huber at dkfz-heidelberg.de>, Ben Bolstad <bmb at bmbolstad.com>

Maintainer: James W. MacDonald <jmacdon at u.washington.edu>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("makecdfenv")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("makecdfenv")

 

PDF	R Script	makecdfenv primer
PDF		Reference Manual

Details

biocViews	DataImport, OneChannel, Preprocessing, Software
Version	1.74.0
In Bioconductor since	BioC 1.6 (R-2.1) or earlier (> 18 years)
License	GPL (>= 2)
Depends	R (>= 2.6.0), affyio
Imports	Biobase, affy, methods, stats, utils, zlibbioc
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me	altcdfenvs
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	makecdfenv_1.74.0.tar.gz
Windows Binary	makecdfenv_1.74.0.zip
macOS Binary (x86_64)	makecdfenv_1.74.0.tgz
macOS Binary (arm64)	makecdfenv_1.74.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/makecdfenv
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/makecdfenv
Bioc Package Browser	https://code.bioconductor.org/browse/makecdfenv/
Package Short Url	https://bioconductor.org/packages/makecdfenv/
Package Downloads Report	Download Stats