customCMPdb

DOI: 10.18129/B9.bioc.customCMPdb  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see customCMPdb.

Customize and Query Compound Annotation Database

Bioconductor version: 3.16

This package serves as a query interface for important community collections of small molecules, while also allowing users to include custom compound collections.

Author: Yuzhu Duan [aut, cre], Thomas Girke [aut]

Maintainer: Yuzhu Duan <yduan004 at ucr.edu>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("customCMPdb")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("customCMPdb")

 

HTML	R Script	customCMPdb
PDF		Reference Manual
Text		NEWS

Details

biocViews	AnnotationHubSoftware, Cheminformatics, Software
Version	1.8.0
In Bioconductor since	BioC 3.12 (R-4.0) (2.5 years)
License	Artistic-2.0
Depends	R (>= 4.0)
Imports	AnnotationHub, RSQLite, XML, utils, ChemmineR, methods, stats, rappdirs, BiocFileCache
LinkingTo
Suggests	knitr, rmarkdown, testthat, BiocStyle
SystemRequirements
Enhances
URL	https://github.com/yduan004/customCMPdb/
BugReports	https://github.com/yduan004/customCMPdb/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	customCMPdb_1.8.0.tar.gz
Windows Binary	customCMPdb_1.8.0.zip
macOS Binary (x86_64)	customCMPdb_1.8.0.tgz
macOS Binary (arm64)	customCMPdb_1.8.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/customCMPdb
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/customCMPdb
Bioc Package Browser	https://code.bioconductor.org/browse/customCMPdb/
Package Short Url	https://bioconductor.org/packages/customCMPdb/
Package Downloads Report	Download Stats