MSstatsQC

DOI: 10.18129/B9.bioc.MSstatsQC  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see MSstatsQC.

Longitudinal system suitability monitoring and quality control for proteomic experiments

Bioconductor version: 3.16

MSstatsQC is an R package which provides longitudinal system suitability monitoring and quality control tools for proteomic experiments.

Author: Eralp Dogu [aut, cre], Sara Taheri [aut], Olga Vitek [aut]

Maintainer: Eralp Dogu <eralp.dogu at gmail.com>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MSstatsQC")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MSstatsQC")

 

HTML	R Script	MSstatsQC
PDF		Reference Manual
Text		NEWS

Details

biocViews	MassSpectrometry, Proteomics, QualityControl, Software
Version	2.16.0
In Bioconductor since	BioC 3.6 (R-3.4) (5.5 years)
License	Artistic License 2.0
Depends	R (>= 3.5.0)
Imports	dplyr, plotly, ggplot2, ggExtra, stats, grid, MSnbase, qcmetrics
LinkingTo
Suggests	knitr, rmarkdown, testthat, RforProteomics
SystemRequirements
Enhances
URL	http://msstats.org/msstatsqc
BugReports	https://groups.google.com/forum/#!forum/msstatsqc
Depends On Me
Imports Me	MSstatsQCgui
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	MSstatsQC_2.16.0.tar.gz
Windows Binary	MSstatsQC_2.16.0.zip (64-bit only)
macOS Binary (x86_64)	MSstatsQC_2.16.0.tgz
macOS Binary (arm64)	MSstatsQC_2.16.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/MSstatsQC
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/MSstatsQC
Bioc Package Browser	https://code.bioconductor.org/browse/MSstatsQC/
Package Short Url	https://bioconductor.org/packages/MSstatsQC/
Package Downloads Report	Download Stats