CHRONOS

DOI: 10.18129/B9.bioc.CHRONOS    

This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see CHRONOS.

CHRONOS: A time-varying method for microRNA-mediated sub-pathway enrichment analysis

Bioconductor version: 3.15

A package used for efficient unraveling of the inherent dynamic properties of pathways. MicroRNA-mediated subpathway topologies are extracted and evaluated by exploiting the temporal transition and the fold change activity of the linked genes/microRNAs.

Author: Aristidis G. Vrahatis, Konstantina Dimitrakopoulou, Panos Balomenos

Maintainer: Panos Balomenos <balomenos at upatras.gr>

Citation (from within R, enter citation("CHRONOS")):

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CHRONOS")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CHRONOS")

 

PDF R Script CHRONOS
PDF   Reference Manual
Text   NEWS

Details

biocViews GraphAndNetwork, KEGG, Pathways, Software, SystemsBiology
Version 1.24.1
In Bioconductor since BioC 3.3 (R-3.3) (6.5 years)
License GPL-2
Depends R (>= 3.5)
Imports XML, RCurl, RBGL, parallel, foreach, doParallel, openxlsx, igraph, circlize, graph, stats, utils, grDevices, graphics, methods, biomaRt, rJava
LinkingTo
Suggests RUnit, BiocGenerics, knitr, rmarkdown
SystemRequirements Java version >= 1.7, Pandoc
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package CHRONOS_1.24.1.tar.gz
Windows Binary CHRONOS_1.24.1.zip
macOS Binary (x86_64) CHRONOS_1.24.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/CHRONOS
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/CHRONOS
Package Short Url https://bioconductor.org/packages/CHRONOS/
Package Downloads Report Download Stats

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