MethylSeqData

DOI: 10.18129/B9.bioc.MethylSeqData    

This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see MethylSeqData.

Collection of Public DNA Methylation Sequencing Datasets

Bioconductor version: 3.13

Base-level (i.e. cytosine-level) counts for a collection of public bisulfite-seq datasets (e.g., WGBS and RRBS), provided as SummarizedExperiment objects with sample- and base-level metadata.

Author: Peter Hickey [aut, cre]

Maintainer: Peter Hickey <peter.hickey at gmail.com>

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MethylSeqData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MethylSeqData")

 

HTML	R Script	User's Guide
PDF		Reference Manual
Text		NEWS

Details

biocViews	ExperimentData, ExperimentHub, Homo_sapiens_Data, MethylSeqData, Mus_musculus_Data, SequencingData
Version	1.2.0
License	CC0
Depends	SummarizedExperiment
Imports	ExperimentHub, HDF5Array, rhdf5, GenomeInfoDb, S4Vectors, GenomicRanges, stats, IRanges, utils
LinkingTo
Suggests	BiocFileCache, BiocStyle, data.table, knitr, rmarkdown
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	MethylSeqData_1.2.0.tar.gz
Windows Binary
macOS 10.13 (High Sierra)
Source Repository	git clone https://git.bioconductor.org/packages/MethylSeqData
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/MethylSeqData
Package Short Url	https://bioconductor.org/packages/MethylSeqData/
Package Downloads Report	Download Stats