JctSeqData

DOI: 10.18129/B9.bioc.JctSeqData    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.13 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see JctSeqData.

Example Junction Count data for use with JunctionSeq

Bioconductor version: 3.13

Junction count data from an example dataset taken from a subset of the RNA-seq reads from six samples. Data was subsampled and modified to provide edge cases for testing and to reduce file sizes.

Author: Stephen Hartley [aut, cre] (PhD)

Maintainer: Stephen Hartley <JunctionSeq-contact at list.nih.gov>

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("JctSeqData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	ExperimentData, GEO, Genome, RNASeqData, Rattus_norvegicus_Data, RepositoryData
Version	1.22.0
License	file LICENSE
Depends	R (>= 3.3)
Imports
LinkingTo
Suggests	knitr, BiocStyle, DESeq2, DEXSeq, edgeR, JunctionSeq
SystemRequirements
Enhances
URL	http://hartleys.github.io/JunctionSeq/
BugReports	http://github.com/hartleys/JunctionSeq/issues
Depends On Me
Imports Me
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Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS 10.13 (High Sierra)
Source Repository	git clone https://git.bioconductor.org/packages/JctSeqData
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/JctSeqData
Package Short Url	https://bioconductor.org/packages/JctSeqData/
Package Downloads Report	Download Stats