DOI: 10.18129/B9.bioc.SNPlocs.Hsapiens.dbSNP149.GRCh38    

This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see SNPlocs.Hsapiens.dbSNP149.GRCh38.

SNP locations for Homo sapiens (dbSNP Build 149)

Bioconductor version: 3.13

SNP locations and alleles for Homo sapiens extracted from NCBI dbSNP Build 149. The source data files used for this package were created by NCBI between November 8-12, 2016, and contain SNPs mapped to reference genome GRCh38.p7 (a patched version of GRCh38 that doesn't alter chromosomes 1-22, X, Y, MT). Note that these SNPs can be "injected" in BSgenome.Hsapiens.NCBI.GRCh38 or in BSgenome.Hsapiens.UCSC.hg38.

Author: Hervé Pagès

Maintainer: H. Pagès <hpages at>

Citation (from within R, enter citation("SNPlocs.Hsapiens.dbSNP149.GRCh38")):


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biocViews AnnotationData, Genetics, Homo_sapiens, SNPlocs
Version 0.99.20
License Artistic-2.0
Depends BSgenome(>= 1.43.4)
Imports methods, utils, BiocGenerics, S4Vectors, IRanges, GenomeInfoDb, GenomicRanges, BSgenome
Suggests Biostrings, BSgenome.Hsapiens.UCSC.hg38
Depends On Me
Imports Me
Suggests Me MafDb.1Kgenomes.phase1.GRCh38, MafDb.1Kgenomes.phase3.GRCh38, MafDb.ExAC.r1.0.GRCh38, MafDb.ExAC.r1.0.nonTCGA.GRCh38, MafDb.gnomAD.r2.1.GRCh38, MafDb.gnomAD.r3.0.GRCh38, MafDb.gnomADex.r2.1.GRCh38, MafDb.TOPMed.freeze5.hg38, MafH5.gnomAD.r3.0.GRCh38, MafH5.gnomAD.v3.1.1.GRCh38
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Source Package SNPlocs.Hsapiens.dbSNP149.GRCh38_0.99.20.tar.gz
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