mdgsa

DOI: 10.18129/B9.bioc.mdgsa    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.13 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see mdgsa.

Multi Dimensional Gene Set Analysis.

Bioconductor version: 3.13

Functions to preform a Gene Set Analysis in several genomic dimensions. Including methods for miRNAs.

Author: David Montaner <dmontaner at cipf.es>

Maintainer: David Montaner <dmontaner at cipf.es>

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("mdgsa")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	Annotation, GO, GeneSetEnrichment, Pathways, Software
Version	1.24.0
In Bioconductor since	BioC 3.1 (R-3.2) (6.5 years)
License	GPL
Depends	R (>= 2.14)
Imports	AnnotationDbi, DBI, GO.db, KEGG.db, cluster, Matrix
LinkingTo
Suggests	BiocStyle, knitr, rmarkdown, limma, ALL, hgu95av2.db, RUnit, BiocGenerics
SystemRequirements
Enhances
URL	https://github.com/dmontaner/mdgsa http://www.dmontaner.com
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Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS 10.13 (High Sierra)
Source Repository	git clone https://git.bioconductor.org/packages/mdgsa
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/mdgsa
Package Short Url	https://bioconductor.org/packages/mdgsa/
Package Downloads Report	Download Stats