OPWeight

DOI: 10.18129/B9.bioc.OPWeight    

This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see OPWeight.

Optimal p-value weighting with independent information

Bioconductor version: 3.13

This package perform weighted-pvalue based multiple hypothesis test and provides corresponding information such as ranking probability, weight, significant tests, etc . To conduct this testing procedure, the testing method apply a probabilistic relationship between the test rank and the corresponding test effect size.

Author: Mohamad Hasan [aut, cre], Paul Schliekelman [aut]

Maintainer: Mohamad Hasan <shakilmohamad7 at gmail.com>

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("OPWeight")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("OPWeight")

 

HTML	R Script	Introduction to OPWeight
PDF		Reference Manual
Text		NEWS

Details

biocViews	BiomedicalInformatics, ImmunoOncology, MultipleComparison, RNASeq, Regression, SNP, Software
Version	1.14.0
In Bioconductor since	BioC 3.6 (R-3.4) (4 years)
License	Artistic-2.0
Depends	R (>= 3.4.0)
Imports	graphics, qvalue, MASS, tibble, stats
LinkingTo
Suggests	airway, BiocStyle, cowplot, DESeq2, devtools, ggplot2, gridExtra, knitr, Matrix, rmarkdown, scales, testthat
SystemRequirements
Enhances
URL	https://github.com/mshasan/OPWeight
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	OPWeight_1.14.0.tar.gz
Windows Binary	OPWeight_1.14.0.zip
macOS 10.13 (High Sierra)	OPWeight_1.14.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/OPWeight
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/OPWeight
Package Short Url	https://bioconductor.org/packages/OPWeight/
Package Downloads Report	Download Stats