DOI: 10.18129/B9.bioc.DEGreport    

This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see DEGreport.

Report of DEG analysis

Bioconductor version: 3.13

Creation of a HTML report of differential expression analyses of count data. It integrates some of the code mentioned in DESeq2 and edgeR vignettes, and report a ranked list of genes according to the fold changes mean and variability for each selected gene.

Author: Lorena Pantano [aut, cre], John Hutchinson [ctb], Victor Barrera [ctb], Mary Piper [ctb], Radhika Khetani [ctb], Kenneth Daily [ctb], Thanneer Malai Perumal [ctb], Rory Kirchner [ctb], Michael Steinbaugh [ctb]

Maintainer: Lorena Pantano <lorena.pantano at>

Citation (from within R, enter citation("DEGreport")):


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HTML R Script QC and downstream analysis for differential expression RNA-seq
PDF   Reference Manual
Text   NEWS


biocViews DifferentialExpression, GeneExpression, ImmunoOncology, RNASeq, ReportWriting, Software, Visualization
Version 1.28.0
In Bioconductor since BioC 3.0 (R-3.1) (7 years)
License MIT + file LICENSE
Depends R (>= 3.6.0)
Imports utils, methods, Biobase, BiocGenerics, broom, circlize, ComplexHeatmap, cowplot, ConsensusClusterPlus, cluster, DESeq2, dplyr, edgeR, ggplot2, ggdendro, grid, ggrepel, grDevices, knitr, logging, lasso2, magrittr, Nozzle.R1, psych, RColorBrewer, reshape, rlang, scales, stats, stringr, S4Vectors, SummarizedExperiment, tidyr, tibble
Suggests BiocStyle, AnnotationDbi, limma, pheatmap, rmarkdown, statmod, testthat
Depends On Me
Imports Me isomiRs
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