DOI: 10.18129/B9.bioc.signet    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.12 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see signet.

signet: Selection Inference in Gene NETworks

Bioconductor version: 3.12

An R package to detect selection in biological pathways. Using gene selection scores and biological pathways data, one can search for high-scoring subnetworks of genes within pathways and test their significance.

Author: Alexandre Gouy <alexandre.gouy at>

Maintainer: <>

Citation (from within R, enter citation("signet")):


To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


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biocViews DifferentialExpression, GeneExpression, GraphAndNetwork, KEGG, NetworkEnrichment, Pathways, Software
Version 1.10.0
In Bioconductor since BioC 3.7 (R-3.5) (3 years)
License GPL-2
Depends R (>= 3.4.0)
Imports graph, igraph, RBGL, graphics, utils, stats, methods
Suggests graphite, BiocStyle, knitr, rmarkdown
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