DOI: 10.18129/B9.bioc.graphite    

This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see graphite.

GRAPH Interaction from pathway Topological Environment

Bioconductor version: 3.12

Graph objects from pathway topology derived from Biocarta, HumanCyc, KEGG, NCI, Panther, PathBank, PharmGKB, Reactome and SMPDB databases.

Author: Gabriele Sales <gabriele.sales at>, Enrica Calura <enrica.calura at>, Chiara Romualdi <chiara.romualdi at>

Maintainer: Gabriele Sales <gabriele.sales at>

Citation (from within R, enter citation("graphite")):


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PDF R Script GRAPH Interaction from pathway Topological Environment
PDF metabolites.pdf
PDF   Reference Manual
Text   NEWS


biocViews BioCarta, GraphAndNetwork, KEGG, Metabolomics, Network, Pathways, Reactome, Software, ThirdPartyClient
Version 1.36.0
In Bioconductor since BioC 2.9 (R-2.14) (9.5 years)
License AGPL-3
Depends R (>= 2.10), methods
Imports AnnotationDbi, checkmate, graph(>= 1.67.1), httr, rappdirs, stats, utils
Suggests a4Preproc, ALL, BiocStyle, clipper, codetools, hgu133plus2.db, hgu95av2.db, impute, knitr,, parallel, R.rsp, RCy3, rmarkdown, SPIA(>= 2.2), testthat, topologyGSA (>= 1.4.0)
Depends On Me PoTRA, ToPASeq
Imports Me EnrichmentBrowser, mogsa, multiGSEA, ReactomePA, StarBioTrek
Suggests Me clipper, metaboliteIDmapping, signet
Links To Me
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