gcrma

DOI: 10.18129/B9.bioc.gcrma    

This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see gcrma.

Background Adjustment Using Sequence Information

Bioconductor version: 3.12

Background adjustment using sequence information

Author: Jean(ZHIJIN) Wu, Rafael Irizarry with contributions from James MacDonald <jmacdon at med.umich.edu> Jeff Gentry

Maintainer: Z. Wu <zwu at stat.brown.edu>

Citation (from within R, enter citation("gcrma")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("gcrma")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("gcrma")

 

PDF gcrma1.2
PDF   Reference Manual
Text   NEWS

Details

biocViews Microarray, OneChannel, Preprocessing, Software
Version 2.62.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 16 years)
License LGPL
Depends R (>= 2.6.0), affy(>= 1.23.2), graphics, methods, stats, utils
Imports Biobase, affy(>= 1.23.2), affyio(>= 1.13.3), XVector, Biostrings(>= 2.11.32), splines, BiocManager
LinkingTo
Suggests affydata, tools, splines, hgu95av2cdf, hgu95av2probe
SystemRequirements
Enhances
URL
Depends On Me affyILM, affyPLM, bgx, maPredictDSC, maskBAD, simpleaffy, webbioc
Imports Me affycoretools, affylmGUI, simpleaffy
Suggests Me AffyExpress, ArrayTools, BiocCaseStudies, panp
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package gcrma_2.62.0.tar.gz
Windows Binary gcrma_2.62.0.zip (32- & 64-bit)
macOS 10.13 (High Sierra) gcrma_2.62.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/gcrma
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/gcrma
Package Short Url https://bioconductor.org/packages/gcrma/
Package Downloads Report Download Stats

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