affylmGUI

DOI: 10.18129/B9.bioc.affylmGUI    

This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see affylmGUI.

GUI for limma Package with Affymetrix Microarrays

Bioconductor version: 3.12

A Graphical User Interface (GUI) for analysis of Affymetrix microarray gene expression data using the affy and limma packages.

Author: James Wettenhall [cre,aut], Gordon Smyth [aut], Ken Simpson [aut], Keith Satterley [ctb]

Maintainer: Gordon Smyth <smyth at wehi.edu.au>

Citation (from within R, enter citation("affylmGUI")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("affylmGUI")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("affylmGUI")

 

HTML about.html
PDF R Script affylmGUI Vignette
HTML CustMenu.html
PDF Extracting affy and limma objects from affylmGUI files
HTML index.html
HTML windowsFocus.html
PDF   Reference Manual
Text   NEWS

Details

biocViews BatchEffect, Bayesian, DataImport, DifferentialExpression, GUI, GeneExpression, Microarray, MultipleComparison, Normalization, OneChannel, Preprocessing, ProprietaryPlatforms, QualityControl, Regression, Software, TimeCourse, Transcription, mRNAMicroarray
Version 1.64.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 16 years)
License GPL (>=2)
Depends
Imports grDevices, graphics, stats, utils, tcltk, tkrplot, limma, affy, affyio, affyPLM, gcrma, BiocGenerics, AnnotationDbi, BiocManager, R2HTML, xtable
LinkingTo
Suggests
SystemRequirements
Enhances
URL http://bioinf.wehi.edu.au/affylmGUI/
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package affylmGUI_1.64.0.tar.gz
Windows Binary affylmGUI_1.64.0.zip
macOS 10.13 (High Sierra) affylmGUI_1.64.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/affylmGUI
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/affylmGUI
Package Short Url https://bioconductor.org/packages/affylmGUI/
Package Downloads Report Download Stats

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