DOI: 10.18129/B9.bioc.spatialLIBD    

This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see spatialLIBD.

LIBD Visium spatial transcriptomics human pilot data inspector

Bioconductor version: 3.11

Inspect interactively the spatial transcriptomics 10x Genomics Visium data from Maynard, Collado-Torres et al, 2020 analyzed by Lieber Institute for Brain Development researchers and collaborators.

Author: Leonardo Collado-Torres [aut, cre] , Kristen R. Maynard [ctb] , Andrew E. Jaffe [ctb]

Maintainer: Leonardo Collado-Torres <lcolladotor at>

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biocViews ExperimentData, ExperimentHub, ExpressionData, Homo_sapiens_Data, PackageTypeData, SequencingData, SingleCellData, Tissue
Version 1.0.0
License Artistic-2.0
Depends SingleCellExperiment, R (>= 3.6)
Imports shiny, golem, ggplot2, cowplot, plotly, viridisLite, shinyWidgets, Polychrome, sessioninfo, grid, grDevices, methods, AnnotationHub, utils, png, scater, DT, ExperimentHub, RColorBrewer, SummarizedExperiment, stats, graphics, S4Vectors, IRanges, fields, benchmarkme
Suggests knitr, rmarkdown, BiocStyle, knitcitations, testthat (>= 2.1.0), covr, here, BiocManager
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