DOI: 10.18129/B9.bioc.ExperimentHub    

This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see ExperimentHub.

Client to access ExperimentHub resources

Bioconductor version: 3.11

This package provides a client for the Bioconductor ExperimentHub web resource. ExperimentHub provides a central location where curated data from experiments, publications or training courses can be accessed. Each resource has associated metadata, tags and date of modification. The client creates and manages a local cache of files retrieved enabling quick and reproducible access.

Author: Bioconductor Package Maintainer [cre], Martin Morgan [aut], Marc Carlson [ctb], Dan Tenenbaum [ctb], Sonali Arora [ctb], Valerie Oberchain [ctb], Kayla Morrell [ctb], Lori Shepherd [aut]

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("ExperimentHub")):


To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



HTML R Script Creating An ExperimentHub Package
HTML R Script ExperimentHub: Access the ExperimentHub Web Service
PDF   Reference Manual
Text   NEWS


biocViews DataImport, GUI, Infrastructure, Software, ThirdPartyClient
Version 1.14.2
In Bioconductor since BioC 3.4 (R-3.3) (4 years)
License Artistic-2.0
Depends methods, BiocGenerics(>= 0.15.10), AnnotationHub(>= 2.19.3), BiocFileCache(>= 1.5.1)
Imports utils, S4Vectors, BiocManager, curl, rappdirs
Suggests knitr, BiocStyle
Enhances ExperimentHubData
Depends On Me adductomicsR, alpineData, benchmarkfdrData2019, biscuiteerData, bodymapRat, brainImageRdata, CellMapperData, curatedAdipoChIP, curatedMetagenomicData, DMRcatedata, FlowSorted.Blood.EPIC, FlowSorted.CordBloodCombined.450k, HDCytoData, HighlyReplicatedRNASeq, HumanAffyData, mcsurvdata, MetaGxBreast, MetaGxOvarian, MetaGxPancreas, muscData, NestLink, restfulSEData, RNAmodR.Data, SeqSQC, sesameData, tartare, tcgaWGBSData.hg19
Imports Me adductData, chipseqDBData, CLLmethylation, CopyNeutralIMA, curatedTCGAData, depmap, DMRcate, DuoClustering2018, ENmix, ExperimentHubData, GSEABenchmarkeR, HarmonizedTCGAData, HCAData, HMP16SData, HMP2Data, MouseGastrulationData, PhyloProfile, PhyloProfileData, pwrEWAS.data, restfulSE, scRNAseq, signatureSearch, signatureSearchData, SingleCellMultiModal, SingleR, spatialLIBD, TabulaMurisData, TENxBrainData, TENxBUSData, TENxPBMCData
Suggests Me ANF, AnnotationHub, celaref, celarefData, CellMapper, curatedAdipoArray, DEqMS, GSE62944, HDF5Array, muscat, tissueTreg
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ExperimentHub_1.14.2.tar.gz
Windows Binary ExperimentHub_1.14.2.zip
macOS 10.13 (High Sierra) ExperimentHub_1.14.2.tgz
Source Repository git clone https://git.bioconductor.org/packages/ExperimentHub
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ExperimentHub
Package Short Url https://bioconductor.org/packages/ExperimentHub/
Package Downloads Report Download Stats

Documentation »


R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: