mtbls2

DOI: 10.18129/B9.bioc.mtbls2    

This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see mtbls2.

MetaboLights MTBLS2: Comparative LC/MS-based profiling of silver nitrate-treated Arabidopsis thaliana leaves of wild-type and cyp79B2 cyp79B3 double knockout plants. Böttcher et al. (2004)

Bioconductor version: 3.11

Indole-3-acetaldoxime (IAOx) represents an early intermediate of the biosynthesis of a variety of indolic secondary metabolites including the phytoanticipin indol-3-ylmethyl glucosinolate and the phytoalexin camalexin (3-thiazol-2'-yl-indole). Arabidopsis thaliana cyp79B2 cyp79B3 double knockout plants are completely impaired in the conversion of tryptophan to indole-3-acetaldoxime and do not accumulate IAOx-derived metabolites any longer. Consequently, comparative analysis of wild-type and cyp79B2 cyp79B3 plant lines has the potential to explore the complete range of IAOx-derived indolic secondary metabolites.

Author: Steffen Neumann <sneumann at ipb-halle.de>

Maintainer: Steffen Neumann <sneumann at ipb-halle.de>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("mtbls2")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("mtbls2")

 

HTML	R Script	MTBLS2 Processing and Analysis with xcms, CAMERA and export to MetaboLights
HTML	R Script	MTBLS2 Processing and Analysis with xcms3, CAMERA and export to MetaboLights
PDF		Reference Manual
Text		NEWS

Details

biocViews	ExperimentData, MassSpectrometryData, RepositoryData
Version	1.18.0
License	CC0
Depends	R (>= 2.10)
Imports
LinkingTo
Suggests	xcms(>= 3.0.0), CAMERA, Risa(>= 1.0.0), knitr, Heatplus, pcaMethods, sp
SystemRequirements
Enhances
URL	http://www.ebi.ac.uk/metabolights/MTBLS2 https://github.com/sneumann/mtbls2
Depends On Me
Imports Me
Suggests Me	Autotuner, IPO, yamss
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	mtbls2_1.18.0.tar.gz
Windows Binary
macOS 10.13 (High Sierra)
Source Repository	git clone https://git.bioconductor.org/packages/mtbls2
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/mtbls2
Package Short Url	https://bioconductor.org/packages/mtbls2/
Package Downloads Report	Download Stats