Autotuner

DOI: 10.18129/B9.bioc.Autotuner    

This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see Autotuner.

Automated parameter selection for untargeted metabolomics data processing

Bioconductor version: 3.11

This package is designed to help faciliate data processing in untargeted metabolomics. To do this, the algorithm contained within the package performs statistical inference on raw data to come up with the best set of parameters to process the raw data.

Author: Craig McLean

Maintainer: Craig McLean <craigmclean23 at gmail.com>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Autotuner")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Autotuner")

 

HTML	R Script	Autotuner
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	MassSpectrometry, Metabolomics, Software
Version	1.2.0
In Bioconductor since	BioC 3.10 (R-3.6) (1 year)
License	MIT + file LICENSE
Depends	R (>= 3.6), methods, Biobase, MSnbase(>= 2.9.3)
Imports	RColorBrewer, mzR, assertthat, scales, entropy, cluster, grDevices, graphics, stats, utils
LinkingTo
Suggests	testthat (>= 2.1.0), covr, devtools, knitr, rmarkdown, mtbls2
SystemRequirements
Enhances
URL	https://github.com/crmclean/Autotuner/
BugReports	https://github.com/crmclean/Autotuner/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	Autotuner_1.2.0.tar.gz
Windows Binary	Autotuner_1.2.0.zip
macOS 10.13 (High Sierra)	Autotuner_1.2.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/Autotuner
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/Autotuner
Package Short Url	https://bioconductor.org/packages/Autotuner/
Package Downloads Report	Download Stats