frma

DOI: 10.18129/B9.bioc.frma    

This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see frma.

Frozen RMA and Barcode

Bioconductor version: 3.11

Preprocessing and analysis for single microarrays and microarray batches.

Author: Matthew N. McCall <mccallm at gmail.com>, Rafael A. Irizarry <rafa at jhu.edu>, with contributions from Terry Therneau

Maintainer: Matthew N. McCall <mccallm at gmail.com>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("frma")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("frma")

 

PDF	R Script	frma: Preprocessing for single arrays and array batches
PDF		Reference Manual
Text		NEWS

Details

biocViews	Microarray, Preprocessing, Software
Version	1.40.0
In Bioconductor since	BioC 2.6 (R-2.11) (10.5 years)
License	GPL (>= 2)
Depends	R (>= 2.10.0), Biobase(>= 2.6.0)
Imports	Biobase, MASS, DBI, affy, methods, oligo, oligoClasses, preprocessCore, utils, BiocGenerics
LinkingTo
Suggests	hgu133afrmavecs, frmaExampleData
SystemRequirements
Enhances
URL	http://bioconductor.org
Depends On Me
Imports Me	ChIPXpress, DeSousa2013, rat2302frmavecs
Suggests Me	antiProfilesData, frmaTools
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	frma_1.40.0.tar.gz
Windows Binary	frma_1.40.0.zip
macOS 10.13 (High Sierra)	frma_1.40.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/frma
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/frma
Package Short Url	https://bioconductor.org/packages/frma/
Package Downloads Report	Download Stats