flowVS

DOI: 10.18129/B9.bioc.flowVS    

This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see flowVS.

Variance stabilization in flow cytometry (and microarrays)

Bioconductor version: 3.11

Per-channel variance stabilization from a collection of flow cytometry samples by Bertlett test for homogeneity of variances. The approach is applicable to microarrays data as well.

Author: Ariful Azad

Maintainer: Ariful Azad <azadcse at gmail.com>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("flowVS")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("flowVS")

 

PDF	R Script	flowVS: Cell population matching and meta-clustering in Flow Cytometry
PDF		Reference Manual

Details

biocViews	CellBasedAssays, FlowCytometry, ImmunoOncology, Microarray, Software
Version	1.19.0
In Bioconductor since	BioC 3.1 (R-3.2) (5.5 years)
License	Artistic-2.0
Depends	R (>= 3.2), methods, flowCore, flowViz, flowStats
Imports
LinkingTo
Suggests	knitr, vsn
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me	flowSpecs
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	flowVS_1.19.0.tar.gz
Windows Binary	flowVS_1.19.0.zip
macOS 10.13 (High Sierra)
Source Repository	git clone https://git.bioconductor.org/packages/flowVS
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/flowVS
Package Short Url	https://bioconductor.org/packages/flowVS/
Package Downloads Report	Download Stats