HPAanalyze

DOI: 10.18129/B9.bioc.HPAanalyze    

This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see HPAanalyze.

Retrieve and analyze data from the Human Protein Atlas

Bioconductor version: 3.11

Provide functions for retrieving, exploratory analyzing and visualizing the Human Protein Atlas data.

Author: Anh Nhat Tran [aut, cre]

Maintainer: Anh Nhat Tran <trannhatanh89 at gmail.com>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("HPAanalyze")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("HPAanalyze")

 

HTML	R Script	1. HPAanalyze quick start guide: Acquire and visualize the Human Protein Atlas (HPA) data in one function
HTML	R Script	2. HPAanalyze in-depth: Working with Human Protein Atlas (HPA) data in R
HTML	R Script	3. HPAanalyze use case: Combine with your Human Protein Atlas (HPA) queries
HTML	R Script	4. HPAanalyze use case: Working with Human Protein Atlas (HPA) xml files offline
HTML	R Script	5. HPAanalyze use case: Export Human Protein Atlas (HPA) data as JSON
HTML	R Script	6. HPAanalyze use case: Download histology images from the Human Protein Atlas
HTML	R Script	99. Code for figures from HPAanalyze paper
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	CellBiology, Proteomics, Software, Visualization
Version	1.6.0
In Bioconductor since	BioC 3.8 (R-3.5) (2 years)
License	GPL-3 + file LICENSE
Depends	R (>= 3.5.0)
Imports	dplyr, openxlsx, ggplot2, tibble, xml2, stats, utils, gridExtra
LinkingTo
Suggests	knitr, rmarkdown, devtools, BiocStyle
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	HPAanalyze_1.6.0.tar.gz
Windows Binary	HPAanalyze_1.6.0.zip
macOS 10.13 (High Sierra)	HPAanalyze_1.6.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/HPAanalyze
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/HPAanalyze
Package Short Url	https://bioconductor.org/packages/HPAanalyze/
Package Downloads Report	Download Stats