DOI: 10.18129/B9.bioc.ontoProc    

This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see ontoProc.

processing of ontologies of anatomy, cell lines, and so on

Bioconductor version: 3.10

Support harvesting of diverse bioinformatic ontologies, making particular use of the ontologyIndex package on CRAN. We provide snapshots of key ontologies for terms about cells, cell lines, chemical compounds, and anatomy, to help analyze genome-scale experiments, particularly cell x compound screens. Another purpose is to strengthen development of compelling use cases for richer interfaces to emerging ontologies.

Author: Vince Carey <stvjc at channing.harvard.edu>

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("ontoProc")):


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HTML R Script ontoProc: some ontology-oriented utilites with single-cell focus for Bioconductor
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biocViews GO, Infrastructure, Software
Version 1.8.1
In Bioconductor since BioC 3.6 (R-3.4) (2.5 years)
License Artistic-2.0
Depends R (>= 3.5), ontologyIndex
Imports Biobase, S4Vectors, methods, AnnotationDbi, stats, utils, shiny, graph, Rgraphviz, ontologyPlot, dplyr, magrittr
Suggests knitr, org.Hs.eg.db, org.Mm.eg.db, testthat, BiocStyle
Depends On Me
Imports Me pogos, tenXplore
Suggests Me BiocOncoTK, TxRegInfra
Links To Me
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Source Package ontoProc_1.8.1.tar.gz
Windows Binary ontoProc_1.8.1.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) ontoProc_1.8.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/ontoProc
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ontoProc
Package Short Url https://bioconductor.org/packages/ontoProc/
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