DOI: 10.18129/B9.bioc.MSstats    

This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see MSstats.

Protein Significance Analysis in DDA, SRM and DIA for Label-free or Label-based Proteomics Experiments

Bioconductor version: 3.10

A set of tools for statistical relative protein significance analysis in DDA, SRM and DIA experiments.

Author: Meena Choi [aut, cre], Tsung-Heng Tsai [aut], Cyril Galitzine [aut], Olga Vitek [aut]

Maintainer: Meena Choi <mnchoi67 at>

Citation (from within R, enter citation("MSstats")):


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biocViews ImmunoOncology, MassSpectrometry, Normalization, Proteomics, QualityControl, Software, TimeCourse
Version 3.18.5
In Bioconductor since BioC 2.13 (R-3.0) (6.5 years)
License Artistic-2.0
Depends R (>= 3.6)
Imports lme4, marray, limma, gplots, ggplot2, methods, grid, ggrepel, preprocessCore, reshape2, survival, statmod, minpack.lm, utils, grDevices, graphics, stats, doSNOW, snow, foreach, data.table, MASS, dplyr, tidyr, broom, purrr, stringr
Suggests BiocStyle, knitr, rmarkdown, MSstatsBioData
Depends On Me
Imports Me artMS, MSstatsSampleSize, MSstatsTMT
Suggests Me MSstatsBioData
Links To Me
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Source Package MSstats_3.18.5.tar.gz
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