DOI: 10.18129/B9.bioc.ChIC    

This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see ChIC.

Quality Control Pipeline for ChIP-Seq Data

Bioconductor version: 3.10

Quality control (QC) pipeline for ChIP-seq data using a comprehensive set of QC metrics, including previously proposed metrics as well as novel ones, based on local characteristics of the enrichment profile. The package provides functions to calculate a set of QC metrics, a compendium with reference values and machine learning models to score sample quality.

Author: Carmen Maria Livi

Maintainer: Carmen Maria Livi <carmen.livi at>

Citation (from within R, enter citation("ChIC")):


To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


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PDF R Script ChIC
PDF   Reference Manual


biocViews ChIPSeq, QualityControl, Software
Version 1.6.0
In Bioconductor since BioC 3.7 (R-3.5) (2 years)
License GPL-2
Depends spp, R (>= 3.6)
Imports>= 1.3.3), caTools, methods, GenomicRanges, IRanges, parallel, progress, caret, grDevices, stats, utils, graphics, S4Vectors, BiocGenerics
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Source Package ChIC_1.6.0.tar.gz
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Mac OS X 10.11 (El Capitan) ChIC_1.6.0.tgz
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