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To install this package, start R and enter:
## try http if https is not available
source("https://bioconductor.org/biocLite.R")
biocLite("snapCGH")
In most cases, you don't need to download the package archive at all.
snapCGH
Segmentation, normalisation and processing of aCGH data.
Bioconductor version: 3.1
Methods for segmenting, normalising and processing aCGH data; including plotting functions for visualising raw and segmented data for individual and multiple arrays.
Author: Mike L. Smith, John C. Marioni, Steven McKinney, Thomas Hardcastle, Natalie P. Thorne
Maintainer: John Marioni <marioni at uchicago.edu>
Citation (from within R,
enter citation("snapCGH")):
Installation
To install this package, start R and enter:
## try http if https is not available
source("https://bioconductor.org/biocLite.R")
biocLite("snapCGH")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("snapCGH")
| R Script | Segmentation Overview | |
| Reference Manual |
Details
| biocViews | CopyNumberVariation, Microarray, Preprocessing, Software, TwoChannel |
| Version | 1.38.0 |
| In Bioconductor since | BioC 1.8 (R-2.3) (9.5 years) |
| License | GPL |
| Depends | limma, DNAcopy, methods |
| Imports | aCGH, cluster, DNAcopy, GLAD, graphics, grDevices, limma, methods, stats, tilingArray, utils |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | ADaCGH2 |
| Suggests Me | beadarraySNP |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | snapCGH_1.38.0.tar.gz |
| Windows Binary | snapCGH_1.38.0.zip (32- & 64-bit) |
| Mac OS X 10.6 (Snow Leopard) | snapCGH_1.38.0.tgz |
| Mac OS X 10.9 (Mavericks) | snapCGH_1.38.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/snapCGH/tree/release-3.1 |
| Package Short Url | http://bioconductor.org/packages/snapCGH/ |
| Package Downloads Report | Download Stats |
Documentation »
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