To install this package, start R and enter:
## try http if https is not available
source("https://bioconductor.org/biocLite.R")
biocLite("aCGH")
In most cases, you don't need to download the package archive at all.
aCGH
Classes and functions for Array Comparative Genomic Hybridization data.
Bioconductor version: 3.1
Functions for reading aCGH data from image analysis output files and clone information files, creation of aCGH S3 objects for storing these data. Basic methods for accessing/replacing, subsetting, printing and plotting aCGH objects.
Author: Jane Fridlyand <jfridlyand at cc.ucsf.edu>, Peter Dimitrov <dimitrov at stat.Berkeley.EDU>
Maintainer: Peter Dimitrov <dimitrov at stat.Berkeley.EDU>
Citation (from within R,
enter citation("aCGH")):
Installation
To install this package, start R and enter:
## try http if https is not available
source("https://bioconductor.org/biocLite.R")
biocLite("aCGH")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("aCGH")
| R Script | aCGH Overview | |
| Reference Manual |
Details
| biocViews | CopyNumberVariation, DataImport, Genetics, Software |
| Version | 1.46.0 |
| In Bioconductor since | BioC 1.6 (R-2.1) or earlier (> 10.5 years) |
| License | GPL-2 |
| Depends | R (>= 2.10), cluster, survival, multtest |
| Imports | Biobase, cluster, grDevices, graphics, methods, multtest, stats, survival, splines, utils |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | CRImage |
| Imports Me | ADaCGH2, snapCGH |
| Suggests Me | beadarraySNP |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | aCGH_1.46.0.tar.gz |
| Windows Binary | aCGH_1.46.0.zip (32- & 64-bit) |
| Mac OS X 10.6 (Snow Leopard) | aCGH_1.46.0.tgz |
| Mac OS X 10.9 (Mavericks) | aCGH_1.46.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/aCGH/tree/release-3.1 |
| Package Short Url | http://bioconductor.org/packages/aCGH/ |
| Package Downloads Report | Download Stats |
Documentation »
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