To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("BSgenome.Mmusculus.UCSC.mm10.masked")

In most cases, you don't need to download the package archive at all.

BSgenome.Mmusculus.UCSC.mm10.masked

Full masked genome sequences for Mus musculus (UCSC version mm10)

Bioconductor version: 3.0

Full genome sequences for Mus musculus (Mouse) as provided by UCSC (mm10, Dec. 2011) and stored in Biostrings objects. The sequences are the same as in BSgenome.Mmusculus.UCSC.mm10, except that each of them has the 2 following masks on top: (1) the mask of assembly gaps (AGAPS mask), and (2) the mask of intra-contig ambiguities (AMB mask).

Author: The Bioconductor Dev Team

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("BSgenome.Mmusculus.UCSC.mm10.masked")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("BSgenome.Mmusculus.UCSC.mm10.masked")

Documentation


PDF		Reference Manual

Details

biocViews	AnnotationData, BSgenome, Genetics, Mus_musculus
Version	1.3.99
License	Artistic-2.0
Depends	BSgenome(>= 1.31.8), BSgenome.Mmusculus.UCSC.mm10
Imports	BSgenome, BSgenome.Mmusculus.UCSC.mm10
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Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	BSgenome.Mmusculus.UCSC.mm10.masked_1.3.99.tar.gz
Windows Binary	BSgenome.Mmusculus.UCSC.mm10.masked_1.3.99.zip
Mac OS X 10.6 (Snow Leopard)	BSgenome.Mmusculus.UCSC.mm10.masked_1.3.99.tgz
Mac OS X 10.9 (Mavericks)	BSgenome.Mmusculus.UCSC.mm10.masked_1.3.99.tgz
Package Downloads Report	Download Stats

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