To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("wateRmelon")

In most cases, you don't need to download the package archive at all.

wateRmelon

Illumina 450 methylation array normalization and metrics

Bioconductor version: 3.0

15 flavours of betas and three performance metrics, with methods for objects produced by methylumi, minfi and IMA packages.

Author: Leonard C Schalkwyk, Ruth Pidsley, Chloe CY Wong, with functions contributed by Nizar Touleimat, Matthieu Defrance, Andrew Teschendorff, Jovana Maksimovic

Maintainer: Leo <Leonard.Schalkwyk at kcl.ac.uk>

Citation (from within R, enter citation("wateRmelon")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("wateRmelon")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("wateRmelon")

PDF	R Script	Package
PDF		Reference Manual
Text		NEWS

Details

biocViews	DNAMethylation, Microarray, Preprocessing, QualityControl, Software, TwoChannel
Version	1.6.0
In Bioconductor since	BioC 2.12 (R-3.0)
License	GPL-3
Depends	R (>= 2.10), limma, methods, matrixStats, methylumi, lumi, ROC, IlluminaHumanMethylation450kanno.ilmn12.hg19
Imports
LinkingTo
Suggests	RPMM
SystemRequirements
Enhances	minfi, methylumi, IMA
URL
Depends On Me
Imports Me	ChAMP
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	wateRmelon_1.6.0.tar.gz
Windows Binary	wateRmelon_1.6.0.zip
Mac OS X 10.6 (Snow Leopard)	wateRmelon_1.6.0.tgz
Mac OS X 10.9 (Mavericks)	wateRmelon_1.6.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats

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