To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("triform")

In most cases, you don't need to download the package archive at all.

triform

Triform finds enriched regions (peaks) in transcription factor ChIP-sequencing data

Bioconductor version: 3.0

The Triform algorithm uses model-free statistics to identify peak-like distributions of TF ChIP sequencing reads, taking advantage of an improved peak definition in combination with known profile characteristics.

Author: Karl Kornacker Developer [aut], Tony Handstad Developer [aut, cre]

Maintainer: Tony Handstad Developer <tony.handstad at gmail.com>

Citation (from within R, enter citation("triform")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("triform")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("triform")

PDF	R Script	Triform users guide
PDF		Reference Manual

Details

biocViews	ChIPSeq, Sequencing, Software
Version	1.8.0
In Bioconductor since	BioC 2.11 (R-2.15)
License	GPL-2
Depends	R (>= 2.11.0), IRanges, yaml
Imports	IRanges, yaml, BiocGenerics
LinkingTo
Suggests	RUnit
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	triform_1.8.0.tar.gz
Windows Binary	triform_1.8.0.zip
Mac OS X 10.6 (Snow Leopard)	triform_1.8.0.tgz
Mac OS X 10.9 (Mavericks)	triform_1.8.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats

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