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To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("simulatorZ")
In most cases, you don't need to download the package archive at all.
simulatorZ
Simulator for Collections of Independent Genomic Data Sets
Bioconductor version: 3.0
simulatorZ is a package intended primarily to simulate collections of independent genomic data sets, as well as performing training and validation with predicting algorithms. It supports ExpressionSets and SummarizedExperiment objects.
Author: Yuqing Zhang, Christoph Bernau, Levi Waldron
Maintainer: Yuqing Zhang <zhangyuqing.pkusms at gmail.com>
Citation (from within R,
enter citation("simulatorZ")):
Installation
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("simulatorZ")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("simulatorZ")
| R Script | SimulatorZ | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | Software, Survival |
| Version | 1.0.0 |
| In Bioconductor since | BioC 3.0 (R-3.1) |
| License | Artistic-2.0 |
| Depends | R (>= 3.1), Biobase, survival, CoxBoost |
| Imports | GenomicRanges, gbm, Hmisc, stats, graphics |
| LinkingTo | |
| Suggests | BiocGenerics, RUnit, BiocStyle, curatedOvarianData, parathyroidSE, superpc |
| SystemRequirements | |
| Enhances | |
| URL | https://github.com/zhangyuqing/simulatorZ |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | simulatorZ_1.0.0.tar.gz |
| Windows Binary | simulatorZ_1.0.0.zip (32- & 64-bit) |
| Mac OS X 10.6 (Snow Leopard) | simulatorZ_1.0.0.tgz |
| Mac OS X 10.9 (Mavericks) | simulatorZ_1.0.0.tgz |
| Browse/checkout source | (username/password: readonly) |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Counting Reads for Differential Expression (parathyroideSE vignette)
- Annotation
- Annotating Variants
- Annotating Ranges
- Flow Cytometry and other assays
- Candidate Binding Sites for Known Transcription Factors
- Cloud-enabled cis-eQTL search and annotation
- RNA-Seq workflow: gene-level exploratory analysis and differential expression
- Changing genomic coordinate systems with rtracklayer::liftOver
- Mass spectrometry and proteomics data analysis
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